Package: DPCD 0.0.1
DPCD: Dirichlet Process Clustering with Dissimilarities
A Bayesian hierarchical model for clustering dissimilarity data using the Dirichlet process. The latent configuration of objects and the number of clusters are automatically inferred during the fitting process. The package supports multiple models which are available to detect clusters of various shapes and sizes using different covariance structures. Additional functions are included to ensure adequate model fits through prior and posterior predictive checks.
Authors:
DPCD_0.0.1.tar.gz
DPCD_0.0.1.zip(r-4.7)DPCD_0.0.1.zip(r-4.6)DPCD_0.0.1.zip(r-4.5)
DPCD_0.0.1.tgz(r-4.6-any)DPCD_0.0.1.tgz(r-4.5-any)
DPCD_0.0.1.tar.gz(r-4.7-any)DPCD_0.0.1.tar.gz(r-4.6-any)
DPCD_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DPCD/json (API)
| # Install 'DPCD' in R: |
| install.packages('DPCD', repos = c('https://sammorrissette.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sammorrissette/dpcd/issues
- dis_mat_example - Dissimilarity Matrix Example
- mcmc_example - MCMC Example Output
Last updated from:95791e2c55. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 146 | ||
| source / vignettes | OK | 218 | ||
| linux-release-x86_64 | OK | 172 | ||
| macos-release-arm64 | OK | 114 | ||
| macos-oldrel-arm64 | OK | 136 | ||
| windows-devel | OK | 111 | ||
| windows-release | OK | 100 | ||
| windows-oldrel | OK | 105 | ||
| wasm-release | OK | 116 |
Exports:bs_scoreextract_clustersmakeDiagonalSigmamakeSphericalSigmaplot_objectspost_predictiveprior_predictiveprocrustesrun_dpcd
Dependencies:abindbackportsbayesplotcheckmatecliclustercodacpp11distributionaldplyrfarvergenericsggplot2ggridgesgluegtableigraphisobandlabelinglatticelifecyclelpSolvemagrittrMatrixmatrixStatsmcclustnimblenumDerivpillarpkgconfigplyrposteriorpracmapurrrR6RColorBrewerRcppreshape2rlangS7scalesstringistringrtensorAtibbletidyrtidyselecttruncnormutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate the Bayesian Silhouette Score | bs_score |
| Dissimilarity Matrix Example | dis_mat_example |
| Extract clusters from MCMC samples | extract_clusters |
| MCMC Example Output | mcmc_example |
| Plot the Object Configuration | plot_objects |
| Posterior Predictive Check | post_predictive |
| Prior Predictive Check | prior_predictive |
| Procrustes Transformation | procrustes |
| Run Dirichlet Process Clustering with Dissimilarities | run_dpcd |
